IIT Guwahati VIBIN RAMAKRISHNAN line MOLECULAR  INFORMATICS AND  DESIGN GROUP (MID)

Vibin Ramakrishnan
Associate Professor
Biosciences & Bioengineering
Indian Institute of Technology
Guwahati -781039, India

vibin
Contact
Office: 1N 104, N Block
Phone: +91 361 258 2227
Fax: +91 361 258 2249
Email: vibin@iitg.ernet.in


Group Publications Patents Web Servers Teaching News


Molecular Informatics and Design Group integrates diverse disciplines of science and engineering in the design and development of advanced materials. Our approach to a research problem is ‘idea centric’ with a clear emphasis on the design phase, adopting modeling and informatics tools. We experiment a reductionist approach in understanding the interaction between molecules resulting in assembled architectures at nano and micro scale, and further employ it in the design of future materials. An information based modeling approach has been employed in the design and generation of tumor homing and cell penetrating molecules to test their efficacy as future drug delivery vehicles.


Recent Publications
(* indicates corresponding author)
recent publications

recent publications

recent publications



recent publications


recent publications


recent publications


recent publications


recent publications



  • Prakash Kishore Hazam, Gaurav Jerath, Nitin Chaudhary, and Vibin Ramakrishnan*. Peptido-mimetic Approach in the Design of Syndiotactic Antimicrobial Peptides. International Journal of Peptide Research and Therapeutics. 2017 ,doi:10.1007/s10989-017-9615-3

  • Prakash Kishore Hazam, Gaurav Jerath, Anil Kumar, Nitin Chaudhary, and Vibin Ramakrishnan*. Effect of tacticity-derived topological constraints in bactericidal peptides.Biochimica et Biophysica Acta. 2017 ,doi:10.1016/j.bbamem.2017.05.002

  • Gaurav Pandey, Jahnu Saikia, Sajitha Sasidharan, Deep C. Joshi, Subhash Thota, Harshal B. Nemade, Nitin Chaudhary, and Vibin Ramakrishnan*. Modulation of Peptide Based Nano-Assemblies with Electric and Magnetic Fields. Scientific Reports. 2017 ,doi:10.1038/s41598-017-02609-z

  • Karabi Saikia, Yalavarthi Durga Sravani, Vibin Ramakrishnan, and Nitin Chaudhary.Highly potent antimicrobial peptides from N-terminal membrane-binding region of E. coli MreB. Scientific Reports. 2017, doi:10.1038/srep42994

  • Sajitha Sasidharan, Prakash Kishore Hazam and Vibin Ramakrishnan*. Symmetry Directed Self-Organization in Peptide Nano-Assemblies Through Aromatic pi-pi Interactions. The Journal of Physical Chemistry B. 2017, 121, 404−411. doi: 10.1021/acs.jpcb.6b09474

  • Anil Kumar, Ranjit Ranbhor, Kirti Patel, Vibin Ramakrishnan*, Susheel Durani. Automated Protein and Peptide Design: Landmarks and Operational Principles. Progress in Biophysics and Molecular Biology. 2016 http://dx.doi.org/10.1016/j.pbiomolbio.2016.12.002

  • Suman Jyoti Deka, Ashalata Roy, Vibin Ramakrishnan, Debasis Manna and Vishal Trivedi. Danazol has potential to cause pkc translocation, cell-cycle dysregulation and apoptosis in breast cancer cells. Chem. Biol. Drug Des. (2016) doi:10.1111/cbdd.12921

  • Gaurav Jerath, Prakash Kishore Hazam, Shashi Shekhar, Vibin Ramakrishnan*. Mapping the Geometric Evolution of Protein Folding Motor. Plos ONE. (2016) 11(10): e0163993. doi:10.1371/journal.pone.0163993

  • News

    July 2017
  • Prakash cracks International Journal of Peptide Research and Therapeutics.

  • May 2017
  • Prakash cracks Biochimica et Biophysica Acta.

  • April 2017
  • Gaurav Pandey cracks nature Scientific Reports.

  • March 2017
  • Sajitha has secured 2nd position in the poster presentation at the institute level in Research Conclave 2017 held at IIT Guwahati, India.

  • Feb 2017
  • Sajitha gets first prize for poster presentation at ABSMSNW 2017.
  • Gaurav Pandey gets first prize for oral presentation at ABSMSNW 2017.

  • Jan 2017
  • DBT Unit of Excellence for MID.
  • Nature scientific reports paper in collaboration with chaudhary group accepted.

  • Dec 2016
  • Sajitha cracks J. Phys. Chem.
  • Sajitha gets best athlete award with 3 gold.
  • PBMB paper accepted.
  • Curr. Biol. Drug Design paper in collaboration with Trivedi group accepted.

  • Nov 2016
    Gaurav Jerath cracks PLOS One.

    Oct 2016
  • Prakash’s first patent published.
  • Sajitha’s first patent published.


  • Patents

  • Area: Therapeutic devices. (Pending Publication) Patent No. TEMP/E-1/25296/2017-KOL. Dated 13.07.2017
  • Area: Bio-nano devices (Published) Patent No. 243/KOL/2015. Dated 09.03.2015
  • Area: Biophysics, Antibiotics (Published) Patent No. 333/KOL/2015. Dated 26.03.2015
  • Area: Antibiotics (Published)
  • Patent No. 353/KOL/2015. Dated 30.03.2015
  • Area: Bio-nano devices (Pending Publication) Patent No. 201631011471 Dated 31.03.2016

  • Webservers

  • Protein Barcode

  • Basic Protein Engineering Toolkit (bPE Toolkit)

  • Geofold

  • IDEAS



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